In late March 2022, conflicts in the Democratic Republic of Congo (DRC) led to &amp;gt;50,000 persons crossing into Kisoro District, Uganda. While the district has a well-organized transit centre to house refugees, most stayed in the Bunagana Town Council (BTC; population ~18,000), the nearest town across the border, as they awaited return home. We carried out a rapid health assessment in July 2022 to establish the health gaps in BTC and recommend public health actions for rapid response.