Uganda confirmed her COVID-19 outbreak on 21-March-2020 and subsequently instituted lockdown restrictions, halting cross-border movements with exception of cargo.  By 11-May-2020, 121 cases had been confirmed. Low COVID-19 surveillance sensitivity cast doubt on the existence of community transmission which remained unconfirmed by the April-2020 rapid survey. The lockdown constrained both access to routine immunizations and surveillance of previously controlled vaccine-preventable-diseases risking their resurgence. We integrated COVID-19 and Acute Flaccid Paralysis (AFP) active surveillance to investigate missed cases of both diseases. 