<p> A total of 407 confirmed malaria cases with no death was identified with attack rate (AR) of 23.2/10,000. The Attack rate was higher among females (25.9/10,000), adults &gt;=15 years (25.3/10,000) and in Boko town (19.1/10,000). 80.3% of total confirmed cases were due to plasmodium Falciparum. Living near stagnant water (AOR = 3.80, 95% CI 1.20–12.22), use of ITN (AOR = 0.19, 95% CI 0.05–0.72), inadequate ITN per family size (AOR = 3.52 95% CI 1.11–11.20), outdoor activities at night (AOR = 4.06, 95% CI 1.20–16.25), and participating in health meeting&nbsp; (AOR = 0.22, 95% CI 0.06–0.73) were independently associated with malaria.</p>